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The files contained in this package are as follows. Conventionally,
extensions ``.doc '', ``kl1'', and ``com'' indicate documents, KL1
source programs, and compile scripts, respectively.
- ./df/
- DeepForest top directory.
- ./df/Readme
- DeepForest introductory document.
- ./df/doc/advertise.txt
- DeepForest advertisement.
- ./df/doc/DeepForest.tex
- DeepForest document in LaTeX.
- ./df/doc/DeepForest
- DeepForest HTML document directory.
- ./df/src
- DeepForest KL1 source programs.
- ./df/src/unix
- DeepForest KLIC source programs for UNIX based OS.
- ./df/src/unix/print_sequences.kl1
-
- ./df/src/unix/make_ph
-
- ./df/src/unix/patch/
-
- ./df/src/unix/ancestor.kl1
-
- ./df/src/unix/beautify.kl1
-
- ./df/src/unix/consensus.kl1
-
- ./df/src/unix/dX.kl1
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- ./df/src/unix/divide.kl1
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- ./df/src/unix/dot_matrix.kl1
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- ./df/src/unix/extract_author.kl1
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- ./df/src/unix/extract_fields.kl1
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- ./df/src/unix/factorial.kl1
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- ./df/src/unix/float.kl1
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- ./df/src/unix/format.kl1
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- ./df/src/unix/fx.kl1
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- ./df/src/unix/get_seq.kl1
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- ./df/src/unix/int.kl1
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- ./df/src/unix/interleave.kl1
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- ./df/src/unix/lines2string.kl1
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- ./df/src/unix/list.kl1
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- ./df/src/unix/log_like.kl1
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- ./df/src/unix/make_bib.kl1
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- ./df/src/unix/make_destbl.kl1
-
- ./df/src/unix/make_gap_matrix.kl1
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- ./df/src/unix/make_records.kl1
-
- ./df/src/unix/make_seq.kl1
-
- ./df/src/unix/matrix.kl1
-
- ./df/src/unix/newton.kl1
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- ./df/src/unix/plot_like.kl1
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- ./df/src/unix/probability.kl1
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- ./df/src/unix/remove_gap_site.kl1
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- ./df/src/unix/search_str.kl1
-
- ./df/src/unix/termio.kl1
-
- ./df/src/unix/tree.kl1
-
- ./df/src/unix/test.kl1
- The test program for DeepForest.
- ./df/src/unix/traverse.1.0.kl1
-
- ./df/src/unix/
- DeepForest compile scripts.
- ./df/src/unix/test_.com
-
- ./df/src/unix/make_gap_matrix.com
-
- ./df/src/unix
- DeepForest perl scripts.
- ./df/src/unix/make_ph
- The perl sciript to add database.
descriptions to a phylicp tree format file. This script is not
complete.
- ./df/src/pimos
- DeepForest KL1 source programs for PIMOS.
Mon Jan 12 07:51:29 JST 1998