DeepForest document
Copyright (c) 1996-1998 Satoshi OOta

Satoshi OOta
Department of Genetics,
School of Life Science,
The Graduate University of Advanced Studies
at Laboratory of Evolutionary Genetics,
National Institute of Genetics,
Mishima, 411 Japan
FAX: +81-559-81-6794
TEL: +81-559-81-6790

Abstract:

DeepForest is a molecular phylogenetic analysis system implemented in logic programming. The major functions are (1) reconstruction of phylogenetic trees using amino acid sequences, (2) database management, (3) multiple alignment. But, the function (3) has not been implemented yet. DeepForest can be executed on both distributed parallel system (PVM) and shared memory parallel system (CRAY CS-6400). There is virtually no limitation for data size.

• Introduction
• The application program
  • Function
  • Environment
  • Files
  • Description of the provided predicates
• How to make and test the program
• Related works of DeepForest
• Expected users for DeepForest
• The limitation
• The newest information
• References
• About this document ...