(76) Intelligent Refiner for Multiple Sequence Alignment

	Machine:     PIM/m
	Environment: UNIXS, PIMOS
	Language:    KL1, C
	Source Code: 1.73 MB
	Documents:   Manual (Japanese)

Overview

Features

• Alignment Editor, Automatic Alignment, and Reference to a Data Base PROSITE.
• Alignment Editor and Reference to a Data Base PROSITE run on UNIX machines.
• Automatic Alignment runs on PIM/m(PIMOS) and on UNIX machines.
• Automatic Alignment is connected with Alignment Editor by a Soket.

Function

The functions of Alignment Editor are as follows:

Insertion and deletion of gaps with a mouse.

Insertion, deletion, and overwriting of amino acids.

This system shows the scores for a Multiple Sequence Alignment, a Data File name, and an Editor mode. This system shows identical columns and bar charts for the scores. It calls the Automatic Alignment program(in KL1 or C) and the Reference to a Data Base PROSITE program(in C).

The functions of Automatic Alignment are as follows:

Automatic Alignment makes Multiple Sequence Alignment under constraints made in the Alignment Editor. It computes Multiple Sequence Alignment on PIM/m(PIMOS) or on UNIX. It can compute the region of Multiple Sequence Alignment shown in the Alignment Editor.

The functions of Reference to Data Base PROSITE are as follows:

Reference of a Data Base PROSITE searches for a motif through a Data Base PROSITE and shows it on a list widget. You can choose an item from the list widget. If you click on the item, it is selected and motif is shown.

FTP

• Intelligent Refiner for Multiple Sequence Alignment [770K]